Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
ESCA rs114497309 chr1:102913586 A/G 9.34E-7 182 13.03 16.17 2.7 KM Plot
ESCA rs1148645 chr4:151824966 A/C 1.61E-5 184 13.4 12.83 3.78 KM Plot
ESCA rs115335595 chr16:1499408 G/A 1.34E-7 183 13.33 14.12 4 KM Plot
ESCA rs115426402 chr1:3200561 T/C 2.44E-9 178 12.87 18.47 3.22 KM Plot
ESCA rs115628499 chr16:1500051 G/C 1.34E-7 183 13.33 14.12 4 KM Plot
ESCA rs11630544 chr15:65614880 C/T 7.24E-5 183 12.87 17.48 4.08 KM Plot
ESCA rs11630658 chr15:62955265 C/T 0.000104 184 7.05 12.83 13.4 KM Plot
ESCA rs11637113 chr15:65624712 C/T 5.03E-5 179 12.93 17.48 4.08 KM Plot
ESCA rs11637155 chr15:65589976 C/T 6.14E-5 182 12.87 16.53 4.08 KM Plot
ESCA rs116404366 chr16:1523866 A/G 8.3E-9 180 13.38 13.42 4 KM Plot
ESCA rs11642526 chr16:71772327 A/T 1.26E-10 179 12.83 15.02 2.95 KM Plot
ESCA rs117044983 chr16:1516852 G/A 1.39E-8 183 13.37 13.1 4 KM Plot
ESCA rs117064795 chr7:111255083 T/C 0 183 13.35 14.5 0.8 KM Plot
ESCA rs11724612 chr4:184647418 C/T 9.4E-5 178 13.03 13.55 6 KM Plot
ESCA rs11733740 chr4:184647590 A/T 9.4E-5 178 13.03 13.55 6 KM Plot